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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
8
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
Available data
95
bam
89
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
20
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
136
Homo sapiens
Biosample type
547
tissue
97
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
430
epithelium
349
pancreas
136
connective tissue
37
vasculature
36
kidney
31
blood vessel
29
embryo
29
liver
22
vein
21
brain
14
heart
14
musculature of body
8
blood
8
bodily fluid
5
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
135
AMP
1
T1D
Genome assembly (visualization)
107
hg19
86
GRCh38
Lab
131
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
2
5
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
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