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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
10
RRBS
4
Hi-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
438
Transcription
288
DNA accessibility
280
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
36
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
4
March, 2020
3
August, 2018
3
December, 2017
3
June, 2018
2
March, 2023
2
October, 2018
1
January, 2018
1
November, 2018
Available data
614
bigWig
610
bam
411
fastq
295
bed narrowPeak
274
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
99
tagAlign
48
bed broadPeak
48
bigBed broadPeak
40
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1088
Homo sapiens
Biosample type
2765
tissue
1080
primary cell
659
cell line
390
in vitro differentiated cells
10
stem cell
Organ
401
epithelium
343
pancreas
40
connective tissue
36
kidney
35
vasculature
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
563
AMP
321
HPAP
204
T1D
2
community
Genome assembly (visualization)
624
hg19
536
GRCh38
1
hg18
Lab
528
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
55
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
files.file_type!
hic
BIOSAMPLE
ASSAY
1090 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 93 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
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