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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
225
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
21
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
438
Transcription
236
DNA accessibility
225
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
192
histone
192
histone modification
102
broad histone mark
90
narrow histone mark
36
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
March, 2020
5
November, 2020
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
November, 2017
3
October, 2022
2
October, 2018
1
January, 2018
1
May, 2019
1
November, 2018
Available data
616
bigWig
612
bam
413
fastq
297
bed narrowPeak
274
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
40
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
987
Homo sapiens
Biosample type
2216
tissue
979
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
345
epithelium
324
pancreas
25
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
458
AMP
324
HPAP
204
T1D
2
community
1
ITG
Genome assembly (visualization)
529
hg19
434
GRCh38
1
hg18
Lab
423
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
32
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
989 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 89 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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