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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
137
total RNA-seq
97
single cell RNA-seq
49
ATAC-seq
27
DNase-seq
1
Hi-C
Assay category
234
Transcription
210
DNA binding
76
DNA accessibility
1
3D chromatin structure
Target of assay
200
histone
200
histone modification
103
narrow histone mark
97
broad histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
1
control
Date released
149
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
22
October, 2019
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
December, 2017
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
510
bam
503
bigWig
263
bed narrowPeak
234
tsv
232
fastq
105
bigBed narrowPeak
98
tagAlign
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
1
bed bed3
1
hic
Organism
521
Homo sapiens
Biosample type
1798
tissue
518
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
220
epithelium
192
pancreas
26
connective tissue
24
kidney
20
vasculature
16
blood vessel
12
vein
11
brain
11
liver
9
musculature of body
6
heart
3
eye
Project
330
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
600
hg19
521
GRCh38
1
hg18
Lab
330
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
BIOSAMPLE
ASSAY
521 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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stem cell
hESC
3
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