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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
230
total RNA-seq
188
ATAC-seq
177
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
19
pCHi-C
6
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
409
Transcription
273
DNA accessibility
257
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
222
histone
222
histone modification
115
broad histone mark
107
narrow histone mark
28
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
March, 2020
3
August, 2018
3
December, 2017
3
March, 2023
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
January, 2018
1
November, 2018
Available data
556
bigWig
549
bam
406
fastq
272
bed narrowPeak
238
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
1012
Homo sapiens
Biosample type
2609
tissue
1005
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
384
epithelium
341
pancreas
31
vasculature
27
blood vessel
22
kidney
22
vein
19
connective tissue
14
brain
11
liver
8
blood
8
bodily fluid
4
eye
3
heart
3
musculature of body
1
bone element
1
bone marrow
Project
488
AMP
324
HPAP
199
T1D
2
community
1
ITG
Genome assembly (visualization)
560
hg19
485
GRCh38
1
hg18
Lab
453
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1014 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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