Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
153
total RNA-seq
129
ATAC-seq
110
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
21
pCHi-C
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
265
Transcription
217
DNA accessibility
212
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
181
histone
181
histone modification
96
broad histone mark
85
narrow histone mark
21
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
4
August, 2021
3
December, 2017
3
March, 2023
2
June, 2018
1
January, 2018
1
November, 2018
1
September, 2018
Available data
402
bigWig
400
bam
229
bed narrowPeak
155
fastq
148
tsv
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
3
hic
2
csv
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
719
Homo sapiens
Biosample type
2201
tissue
711
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
393
epithelium
pancreas
32
connective tissue
32
vasculature
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
342
AMP
204
T1D
172
HPAP
2
community
1
ITG
Genome assembly (visualization)
415
hg19
329
GRCh38
1
hg18
Lab
307
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
2
Anna Gloyn, Oxford
1
ITG
Audit category:
48
inconsistent ontology term
28
audit script error
Audit category:
3
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
721 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
RRBS
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
+ See 74 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download