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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
43
ChIP-seq
31
DNase-seq
21
pCHi-C
6
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
420
Transcription
288
DNA accessibility
49
DNA methylation
43
DNA binding
6
3D chromatin structure
Target of assay
239
histone
histone modification
123
broad histone mark
116
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
December, 2017
1
January, 2018
1
November, 2018
Available data
389
bam
362
bigWig
338
fastq
256
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
31
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
2
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
826
Homo sapiens
Biosample type
2072
tissue
820
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
327
epithelium
288
pancreas
24
connective tissue
19
kidney
15
vasculature
11
blood vessel
11
brain
9
liver
8
blood
8
bodily fluid
7
vein
6
heart
3
eye
3
musculature of body
1
bone element
1
bone marrow
Project
381
AMP
324
HPAP
120
T1D
2
community
1
ITG
Genome assembly (visualization)
368
hg19
321
GRCh38
1
hg18
Lab
376
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
month_released!
July, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
828 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
RRBS
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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stem cell
SB Ad3.1
1
1
hESC
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
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