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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
ATAC-seq
4
DNase-seq
4
total RNA-seq
3
Hi-C
1
FAIRE-seq
Assay category
24
DNA binding
11
DNA accessibility
4
Transcription
3
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
338
May, 2021
147
May, 2020
134
May, 2022
127
August, 2017
104
February, 2023
74
February, 2021
73
September, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
August, 2021
46
December, 2017
43
April, 2018
42
October, 2019
39
February, 2018
31
July, 2019
13
March, 2020
9
November, 2017
8
January, 2021
7
August, 2020
7
December, 2019
6
November, 2020
5
January, 2018
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
November, 2018
Available data
35
bam
27
bigWig
23
bed narrowPeak
15
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tsv
3
hic
2
bed bed3+
2
bedpe bed3+
1
tar
Organism
42
Homo sapiens
Biosample type
242
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
0
stem cell
Organ
33
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
2
connective tissue
1
liver
Project
42
AMP
Genome assembly (visualization)
34
hg19
26
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
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in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
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