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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
4
DNase-seq
4
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
260
DNA accessibility
259
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
219
histone
219
histone modification
112
broad histone mark
107
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
June, 2019
27
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2023
1
November, 2018
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
1031
Homo sapiens
Biosample type
2532
tissue
1031
primary cell
659
cell line
369
in vitro differentiated cells
7
stem cell
Organ
385
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
502
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
583
hg19
496
GRCh38
Lab
469
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
1031 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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