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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
258
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
44
August, 2017
43
April, 2018
31
June, 2019
30
October, 2019
22
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1029
Homo sapiens
Biosample type
2499
tissue
1029
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
378
epithelium
346
pancreas
32
connective tissue
24
vasculature
23
blood vessel
23
kidney
18
vein
12
musculature of body
11
liver
9
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
500
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
576
hg19
491
GRCh38
Lab
465
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
bigBed bedMethyl
BIOSAMPLE
ASSAY
1029 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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