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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
279
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
53
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
27
October, 2019
22
July, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
790
Homo sapiens
Biosample type
2242
tissue
790
primary cell
630
cell line
351
in vitro differentiated cells
10
stem cell
Organ
309
epithelium
275
pancreas
30
connective tissue
29
vasculature
26
blood vessel
21
kidney
19
vein
15
brain
12
musculature of body
10
liver
9
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
366
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
511
hg19
460
GRCh38
Lab
331
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
37
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed bedMethyl
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
790 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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