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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
141
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
6
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
Transcription
155
DNA accessibility
141
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
107
histone
107
histone modification
57
narrow histone mark
50
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
102
May, 2020
73
September, 2018
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
20
May, 2021
12
February, 2023
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
November, 2018
Available data
429
bam
388
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
475
Homo sapiens
Biosample type
2249
tissue
556
cell line
475
primary cell
339
in vitro differentiated cells
8
stem cell
Organ
232
epithelium
194
pancreas
32
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
475
AMP
Genome assembly (visualization)
368
hg19
300
GRCh38
Lab
475
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
475 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
13
12
10
pancreatic alpha cell
6
13
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
5
8
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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