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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
17
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
4
control
Date released
17
October, 2019
5
July, 2019
2
November, 2017
1
March, 2020
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
25
Homo sapiens
Biosample type
128
tissue
66
cell line
25
primary cell
Organ
384
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
25
AMP
Genome assembly (visualization)
20
hg19
12
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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