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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
62
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
252
Transcription
185
DNA binding
62
DNA accessibility
Target of assay
156
histone
156
histone modification
79
broad histone mark
77
narrow histone mark
32
control
Date released
149
May, 2021
90
May, 2020
58
September, 2018
48
July, 2018
43
April, 2018
39
August, 2017
18
July, 2019
18
October, 2019
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
500
Homo sapiens
Biosample type
1347
tissue
500
primary cell
276
in vitro differentiated cells
227
cell line
3
stem cell
Organ
181
epithelium
172
pancreas
21
connective tissue
15
kidney
11
vasculature
10
blood vessel
10
liver
7
vein
6
brain
6
heart
4
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
320
AMP
180
T1D
Genome assembly (visualization)
472
hg19
420
GRCh38
Lab
320
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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