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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
190
ChIP-seq
184
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
236
DNA accessibility
190
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
control
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
28
July, 2019
27
August, 2017
18
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
577
bam
393
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
944
Homo sapiens
Biosample type
1989
tissue
944
primary cell
340
in vitro differentiated cells
224
cell line
9
stem cell
Organ
324
epithelium
312
pancreas
21
connective tissue
17
kidney
12
vasculature
11
blood vessel
11
liver
8
blood
8
bodily fluid
7
vein
5
heart
4
brain
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
415
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
516
hg19
428
GRCh38
Lab
383
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
944 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
7
12
29
31
1
pancreatic beta cell
21
7
12
16
16
1
exocrine cell
39
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