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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
188
Transcription
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
85
May, 2021
31
July, 2019
24
June, 2019
18
September, 2020
12
February, 2023
10
October, 2019
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
367
bam
366
bigWig
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
494
Homo sapiens
Biosample type
1713
tissue
494
primary cell
175
in vitro differentiated cells
171
cell line
6
stem cell
Organ
129
epithelium
88
pancreas
24
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
218
AMP
155
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
237
hg19
177
GRCh38
Lab
216
AMP-T2D consortium
155
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
22
inconsistent ontology term
4
audit script error
files.file_type!
fastq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
494 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
51
21
monocyte
15
54
1
1
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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