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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
59
single cell RNA-seq
2
small RNA-seq
Assay category
228
DNA accessibility
188
Transcription
185
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
55
May, 2021
47
May, 2020
33
May, 2022
18
July, 2019
18
September, 2020
5
April, 2018
5
December, 2019
4
November, 2020
2
October, 2019
1
February, 2021
Available data
254
bigWig
252
bam
252
tsv
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
188
Homo sapiens
Biosample type
1124
tissue
188
primary cell
123
in vitro differentiated cells
110
cell line
2
stem cell
Organ
16
epithelium
12
connective tissue
6
kidney
5
liver
5
pancreas
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
96
T1D
51
HPAP
41
AMP
Genome assembly (visualization)
134
hg19
132
GRCh38
Lab
98
Kyle Gaulton, UCSD
51
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
54
Langerhans cell
51
hepatocyte
5
osteoblast
5
CD8-positive, alpha-beta T cell
4
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