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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
59
single cell RNA-seq
2
small RNA-seq
Assay category
228
DNA accessibility
185
DNA binding
183
Transcription
51
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
55
May, 2021
47
May, 2020
33
May, 2022
18
July, 2019
18
September, 2020
5
April, 2018
December, 2019
4
November, 2020
2
October, 2019
1
February, 2021
Available data
249
bigWig
fastq
247
bam
247
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
183
Homo sapiens
Biosample type
1123
tissue
183
primary cell
121
in vitro differentiated cells
110
cell line
2
stem cell
Organ
12
connective tissue
11
epithelium
6
kidney
5
pancreas
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
96
T1D
51
HPAP
36
AMP
Genome assembly (visualization)
129
hg19
127
GRCh38
Lab
98
Kyle Gaulton, UCSD
51
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
December, 2019
BIOSAMPLE
ASSAY
183 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
54
Langerhans cell
51
osteoblast
5
CD8-positive, alpha-beta T cell
4
pancreatic acinar cell
3
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