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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
55
ChIP-seq
51
single cell RNA-seq
41
WGBS
29
snATAC-seq
17
pCHi-C
9
Hi-C
9
RRBS
5
total RNA-seq
3
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
184
DNA accessibility
56
Transcription
55
DNA binding
51
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
26
broad histone mark
16
control
13
narrow histone mark
Date released
134
May, 2022
102
May, 2020
57
May, 2021
18
September, 2020
13
July, 2019
12
February, 2023
12
October, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2017
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
Available data
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
372
Homo sapiens
Biosample type
821
tissue
372
primary cell
106
in vitro differentiated cells
92
cell line
6
stem cell
Organ
108
epithelium
83
pancreas
13
vasculature
12
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
connective tissue
4
brain
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
193
AMP
155
HPAP
24
T1D
Genome assembly (visualization)
402
hg19
GRCh38
Lab
158
AMP-T2D consortium
155
Klaus Kaestner, Upenn
59
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
4
audit script error
files.file_type!
fastq
assembly!
GRCh38
BIOSAMPLE
ASSAY
372 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
total RNA-seq
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
33
1
2
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
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