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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ATAC-seq
72
total RNA-seq
64
ChIP-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
215
DNA accessibility
133
Transcription
64
DNA binding
50
DNA methylation
10
3D chromatin structure
Target of assay
46
histone
46
histone modification
23
broad histone mark
23
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
460
bam
442
bigWig
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
473
Homo sapiens
Biosample type
2320
tissue
473
primary cell
214
cell line
121
in vitro differentiated cells
6
stem cell
Organ
168
epithelium
88
pancreas
36
kidney
35
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
264
AMP
155
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
218
hg19
158
GRCh38
Lab
264
AMP-T2D consortium
155
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
May, 2021
BIOSAMPLE
ASSAY
473 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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