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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
167
ATAC-seq
122
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
28
DNase-seq
17
pCHi-C
9
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
225
DNA accessibility
183
Transcription
181
DNA binding
50
DNA methylation
9
3D chromatin structure
Target of assay
161
histone
161
histone modification
88
broad histone mark
73
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
53
June, 2019
33
October, 2019
29
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
May, 2019
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
602
bigWig
597
bam
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
665
Homo sapiens
Biosample type
2082
tissue
665
primary cell
253
in vitro differentiated cells
201
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
305
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
389
hg19
296
GRCh38
Lab
270
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
4
audit script error
files.file_type!
fastq
organ_slims!
liver
BIOSAMPLE
ASSAY
665 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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