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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
RRBS
4
Hi-C
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
174
DNA accessibility
58
DNA methylation
37
DNA binding
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
2
October, 2019
1
August, 2017
1
November, 2018
1
September, 2018
Available data
613
bigWig
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
473
Homo sapiens
Biosample type
819
tissue
473
primary cell
99
in vitro differentiated cells
78
cell line
7
stem cell
Organ
159
epithelium
149
pancreas
8
blood
8
bodily fluid
5
kidney
4
brain
3
connective tissue
3
vasculature
2
blood vessel
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
321
HPAP
128
AMP
24
T1D
Genome assembly (visualization)
49
hg19
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
93
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
27
audit script error
9
inconsistent ontology term
files.file_type!
hic
bam
BIOSAMPLE
ASSAY
473 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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