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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
15
single cell RNA-seq
14
total RNA-seq
9
RRBS
6
WGBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
31
Transcription
28
DNA accessibility
15
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
45
fastq
25
tsv
24
bigWig
21
bam
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3+
4
hdf5
1
bed bed3
1
bed narrowPeak
Organism
79
Homo sapiens
Biosample type
622
tissue
96
cell line
79
primary cell
26
in vitro differentiated cells
Organ
19
epithelium
11
connective tissue
7
brain
7
kidney
6
pancreas
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
45
HPAP
34
AMP
Genome assembly (visualization)
34
hg19
20
GRCh38
Lab
45
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
files.file_type!
hic
BIOSAMPLE
ASSAY
79 results
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snATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
WGBS
Hi-C
small RNA-seq
ATAC-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
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