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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
2
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
7
DNA accessibility
2
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
20
October, 2019
6
November, 2017
5
July, 2019
4
June, 2019
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
132
tissue
66
cell line
35
primary cell
Organ
401
epithelium
343
pancreas
39
connective tissue
36
kidney
35
vasculature
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
35
AMP
Genome assembly (visualization)
29
hg19
22
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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