Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
179
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
179
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
139
histone
139
histone modification
71
broad histone mark
68
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
109
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
42
August, 2017
31
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
700
Homo sapiens
Biosample type
2029
tissue
700
primary cell
611
cell line
311
in vitro differentiated cells
10
stem cell
Organ
311
epithelium
275
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
10
heart
7
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
360
AMP
227
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
422
hg19
362
GRCh38
Lab
325
AMP-T2D consortium
227
Klaus Kaestner, Upenn
147
Kyle Gaulton, UCSD
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
700 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
13
31
1
Langerhans cell
85
pancreatic beta cell
21
12
13
16
1
monocyte
54
1
1
1
exocrine cell
39
+ See 81 more…
See all biosamples
Download