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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
128
DNA binding
69
DNA accessibility
Target of assay
118
histone
118
histone modification
61
broad histone mark
57
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
46
September, 2018
43
May, 2021
22
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
2
November, 2020
1
February, 2021
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
197
Homo sapiens
Biosample type
799
tissue
390
cell line
197
primary cell
114
in vitro differentiated cells
2
stem cell
Organ
103
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
3
liver
Project
197
AMP
Genome assembly (visualization)
190
hg19
163
GRCh38
Lab
167
AMP-T2D consortium
30
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
monocyte
13
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