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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
77
ATAC-seq
35
single cell RNA-seq
35
snATAC-seq
32
ChIP-seq
16
pCHi-C
9
DNase-seq
6
WGBS
1
DNAme array
1
Hi-C
Assay category
130
Transcription
121
DNA accessibility
32
DNA binding
7
DNA methylation
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
88
February, 2023
57
May, 2020
45
February, 2021
40
September, 2020
22
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
8
October, 2019
7
August, 2020
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
183
fastq
zippedFastqFolder
35
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
307
Homo sapiens
Biosample type
982
tissue
307
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
99
epithelium
81
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
168
HPAP
114
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
536
GRCh38
Lab
168
Klaus Kaestner, Upenn
114
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
files.file_type!
zippedFastqFolder
assembly!
hg19
BIOSAMPLE
ASSAY
307 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
DNase-seq
WGBS
DNAme array
Hi-C
primary cell
pancreatic alpha cell
42
7
6
6
Langerhans cell
33
27
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
CD4-positive, alpha-beta memory T cell
22
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