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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
233
DNA binding
114
DNA accessibility
Target of assay
200
histone
200
histone modification
100
broad histone mark
100
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
604
bigWig
600
bam
400
fastq
289
bed narrowPeak
270
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
600
Homo sapiens
Biosample type
1838
tissue
600
primary cell
291
in vitro differentiated cells
268
cell line
3
stem cell
Organ
236
epithelium
194
pancreas
36
connective tissue
31
kidney
26
vasculature
24
blood vessel
20
vein
13
musculature of body
12
heart
12
liver
8
brain
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
420
AMP
180
T1D
Genome assembly (visualization)
565
hg19
519
GRCh38
Lab
420
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
600 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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