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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
27
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
24
June, 2019
3
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
609
bam
609
bigWig
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
33
Homo sapiens
Biosample type
205
tissue
33
primary cell
25
in vitro differentiated cells
3
stem cell
2
cell line
Organ
19
epithelium
10
kidney
7
connective tissue
6
vasculature
5
brain
5
liver
4
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
33
AMP
Genome assembly (visualization)
30
GRCh38
26
hg19
Lab
31
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
33 results
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DNase-seq
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
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