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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
DNase-seq
31
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
204
DNA accessibility
31
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
15
histone
15
histone modification
13
transcription factor
8
narrow histone mark
7
broad histone mark
3
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
9
November, 2018
6
October, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
September, 2017
1
February, 2021
1
May, 2022
1
November, 2020
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
242
Homo sapiens
Biosample type
205
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
pancreas
21
epithelium
18
ureter
14
connective tissue
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
242
AMP
Genome assembly (visualization)
234
GRCh38
219
hg19
Lab
240
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
BIOSAMPLE
ASSAY
242 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
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