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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
39
ATAC-seq
28
DNase-seq
1
FAIRE-seq
Assay category
224
DNA binding
68
DNA accessibility
Target of assay
215
histone
215
histone modification
112
broad histone mark
103
narrow histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
44
June, 2019
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
610
bigWig
605
bam
409
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
292
Homo sapiens
Biosample type
914
tissue
404
cell line
292
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
eye
Project
208
AMP
84
T1D
Genome assembly (visualization)
285
hg19
258
GRCh38
Lab
178
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
BIOSAMPLE
ASSAY
292 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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