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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
DNA binding
60
DNA accessibility
7
DNA methylation
Date released
76
February, 2023
48
July, 2018
45
February, 2021
41
September, 2018
41
September, 2020
38
April, 2018
7
August, 2020
5
August, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
315
Homo sapiens
Biosample type
315
primary cell
157
tissue
21
in vitro differentiated cells
7
cell line
1
stem cell
Organ
188
pancreas
185
epithelium
3
connective tissue
Project
169
HPAP
146
AMP
Genome assembly (visualization)
152
GRCh38
144
hg19
Lab
169
Klaus Kaestner, Upenn
146
AMP-T2D consortium
Audit category:
27
audit script error
7
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
315 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
10
exocrine cell
39
pancreatic acinar cell
9
4
5
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