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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
54
total RNA-seq
12
ATAC-seq
10
RRBS
6
WGBS
2
small RNA-seq
Assay category
156
Transcription
16
DNA methylation
12
DNA accessibility
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
27
July, 2019
26
September, 2018
12
February, 2023
7
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
August, 2017
1
May, 2021
Available data
433
bigWig
429
bam
409
fastq
211
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
184
Homo sapiens
Biosample type
1101
tissue
184
primary cell
131
in vitro differentiated cells
118
cell line
4
stem cell
Organ
122
epithelium
108
pancreas
16
connective tissue
9
kidney
6
liver
5
heart
4
brain
3
musculature of body
3
vasculature
2
adipose tissue
2
artery
2
blood vessel
1
eye
1
pericardium
Project
178
AMP
T1D
6
HPAP
Genome assembly (visualization)
166
hg19
156
GRCh38
Lab
178
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
15
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
184 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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