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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
57
ChIP-seq
34
ATAC-seq
29
DNase-seq
6
WGBS
2
small RNA-seq
1
FAIRE-seq
Assay category
252
Transcription
64
DNA accessibility
57
DNA binding
6
DNA methylation
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
3
control
1
chromatin remodeller
Date released
52
May, 2021
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
40
September, 2018
19
August, 2017
18
July, 2019
15
October, 2019
12
February, 2023
7
February, 2021
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
379
Homo sapiens
Biosample type
1637
tissue
474
cell line
379
primary cell
148
in vitro differentiated cells
4
stem cell
Organ
177
epithelium
130
pancreas
30
connective tissue
23
vasculature
22
kidney
19
blood vessel
14
brain
13
vein
11
musculature of body
10
heart
7
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
277
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
357
GRCh38
354
hg19
Lab
277
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
40
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
FAIRE-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
6
pancreatic beta cell
10
12
7
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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