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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
total RNA-seq
96
single cell RNA-seq
12
ATAC-seq
6
WGBS
1
small RNA-seq
Assay category
237
Transcription
12
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
46
July, 2018
45
May, 2020
41
April, 2018
26
September, 2018
12
February, 2023
12
July, 2019
6
February, 2021
5
December, 2019
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
255
Homo sapiens
Biosample type
619
tissue
255
primary cell
126
in vitro differentiated cells
119
cell line
3
stem cell
Organ
116
epithelium
108
pancreas
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
153
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
237
GRCh38
237
hg19
Lab
153
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
255 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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