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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
180
single cell RNA-seq
149
total RNA-seq
137
ChIP-seq
48
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
331
Transcription
265
DNA accessibility
137
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
98
May, 2020
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
402
fastq
388
bam
364
bigWig
161
tsv
156
bed narrowPeak
153
zippedFastqFolder
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
800
Homo sapiens
Biosample type
2594
tissue
800
primary cell
565
cell line
232
in vitro differentiated cells
9
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
25
connective tissue
22
vein
21
brain
13
liver
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
475
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
375
hg19
324
GRCh38
Lab
475
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
800 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
11
4
8
1
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