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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ChIP-seq
1
pCHi-C
Assay category
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
4
July, 2019
3
August, 2021
1
February, 2021
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
8
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
8
primary cell
3
stem cell
2
cell line
Organ
5
epithelium
4
liver
3
brain
2
blood vessel
2
connective tissue
2
vasculature
Project
8
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
8
AMP-T2D consortium
Kyle Gaulton, UCSD
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
8 results
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Hi-C
ChIP-seq
pCHi-C
primary cell
hepatocyte
3
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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