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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
175
single cell RNA-seq
148
total RNA-seq
141
ChIP-seq
41
WGBS
21
snATAC-seq
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
325
Transcription
224
DNA accessibility
141
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
107
histone
107
histone modification
57
narrow histone mark
50
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
20
May, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
426
bam
396
bigWig
364
fastq
180
bed narrowPeak
167
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
34
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
752
Homo sapiens
Biosample type
2004
tissue
752
primary cell
502
cell line
320
in vitro differentiated cells
10
stem cell
Organ
378
epithelium
340
pancreas
29
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
472
AMP
279
HPAP
1
ITG
Genome assembly (visualization)
368
hg19
309
GRCh38
Lab
472
AMP-T2D consortium
279
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigBed broadPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
752 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
12
52
13
25
1
Langerhans cell
73
21
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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