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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
162
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
4
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
280
DNA accessibility
162
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
31
October, 2019
18
May, 2021
13
July, 2019
12
February, 2023
9
November, 2017
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
Available data
273
bam
242
bigWig
181
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
505
Homo sapiens
Biosample type
1499
tissue
540
cell line
505
primary cell
210
in vitro differentiated cells
8
stem cell
Organ
238
epithelium
188
pancreas
33
vasculature
30
kidney
27
blood vessel
23
connective tissue
20
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
361
AMP
144
HPAP
Genome assembly (visualization)
252
hg19
199
GRCh38
Lab
361
AMP-T2D consortium
144
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
hic
assay_slims!
Transcription
BIOSAMPLE
ASSAY
505 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
31
pancreatic beta cell
23
13
16
Langerhans cell
48
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
pancreatic endocrine cell
23
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