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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
100
single cell RNA-seq
84
ATAC-seq
54
total RNA-seq
2
small RNA-seq
1
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
156
Transcription
137
DNA binding
86
DNA accessibility
Target of assay
103
histone
103
histone modification
55
narrow histone mark
48
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
72
September, 2018
48
July, 2018
45
May, 2020
44
August, 2017
43
April, 2018
31
June, 2019
27
October, 2019
18
July, 2019
14
May, 2021
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
380
Homo sapiens
Biosample type
1692
tissue
523
cell line
380
primary cell
290
in vitro differentiated cells
3
stem cell
Organ
220
epithelium
194
pancreas
30
connective tissue
21
kidney
20
vasculature
19
blood vessel
16
vein
12
musculature of body
10
liver
9
heart
6
brain
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
380
AMP
Genome assembly (visualization)
352
hg19
300
GRCh38
Lab
380
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
380 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
small RNA-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
12
7
10
pancreatic alpha cell
13
12
6
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
5
4
pancreatic endocrine cell
23
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