Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
54
total RNA-seq
28
DNase-seq
21
ChIP-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
156
Transcription
40
DNA accessibility
21
DNA binding
6
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
1
chromatin remodeller
Date released
48
July, 2018
43
April, 2018
26
September, 2018
24
June, 2019
18
July, 2019
14
August, 2017
12
February, 2023
7
February, 2021
6
November, 2017
6
October, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
May, 2021
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
223
Homo sapiens
Biosample type
1252
tissue
223
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
138
epithelium
108
pancreas
21
connective tissue
16
kidney
14
brain
14
vasculature
10
blood vessel
7
heart
7
liver
4
vein
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
217
AMP
6
HPAP
Genome assembly (visualization)
201
GRCh38
198
hg19
Lab
217
AMP-T2D consortium
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
223 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
skeletal muscle myoblast
1
1
13
pancreatic ductal cell
10
4
+ See 49 more…
See all biosamples
Download