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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
162
ChIP-seq
147
total RNA-seq
100
ATAC-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
336
Transcription
180
DNA accessibility
162
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
409
fastq
384
bam
349
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
737
Homo sapiens
Biosample type
2516
tissue
737
primary cell
652
cell line
343
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
416
AMP
321
HPAP
Genome assembly (visualization)
359
hg19
355
GRCh38
Lab
416
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2020
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
737 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
12
13
52
35
31
Langerhans cell
85
48
pancreatic beta cell
12
13
21
23
16
exocrine cell
39
pancreatic acinar cell
12
8
4
9
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