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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
147
total RNA-seq
100
ATAC-seq
48
snATAC-seq
47
WGBS
39
ChIP-seq
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
336
Transcription
180
DNA accessibility
58
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
May, 2020
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
16
May, 2021
13
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
336
fastq
265
bam
237
bigWig
174
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
624
Homo sapiens
Biosample type
1932
tissue
624
primary cell
618
cell line
255
in vitro differentiated cells
8
stem cell
Organ
340
epithelium
288
pancreas
30
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
324
HPAP
299
AMP
1
ITG
Genome assembly (visualization)
252
hg19
242
GRCh38
Lab
324
Klaus Kaestner, Upenn
299
AMP-T2D consortium
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
624 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
12
52
35
31
6
1
Langerhans cell
85
48
pancreatic beta cell
12
21
23
16
6
1
exocrine cell
39
pancreatic acinar cell
12
4
9
1
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