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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
113
single cell RNA-seq
92
ChIP-seq
68
total RNA-seq
48
snATAC-seq
31
DNase-seq
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
209
DNA accessibility
183
Transcription
92
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
65
histone
65
histone modification
34
narrow histone mark
31
broad histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
20
May, 2021
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
235
bam
206
bigWig
151
fastq
113
bed narrowPeak
87
bigBed narrowPeak
73
zippedFastqFolder
66
tsv
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
503
Homo sapiens
Biosample type
2271
tissue
565
cell line
503
primary cell
344
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
330
AMP
172
HPAP
1
ITG
Genome assembly (visualization)
228
hg19
164
GRCh38
Lab
330
AMP-T2D consortium
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
organ_slims!
pancreas
BIOSAMPLE
ASSAY
503 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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