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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
149
total RNA-seq
97
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
280
DNA accessibility
97
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
25
October, 2019
18
May, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
369
fastq
366
bam
336
bigWig
174
tsv
153
zippedFastqFolder
127
bed narrowPeak
83
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
784
Homo sapiens
Biosample type
2376
tissue
784
primary cell
638
cell line
302
in vitro differentiated cells
9
stem cell
Organ
371
epithelium
315
pancreas
34
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
459
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
351
hg19
294
GRCh38
Lab
459
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
784 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
9
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
9
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
4
1
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