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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
10
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
15
Transcription
11
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
RNA binding protein
1
transcription factor
Date released
16
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
Available data
35
bam
31
bigWig
16
bed narrowPeak
15
tsv
14
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
37
Homo sapiens
Biosample type
542
tissue
93
in vitro differentiated cells
37
primary cell
1
stem cell
Organ
401
epithelium
346
pancreas
37
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
37
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
37
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
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