Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
149
total RNA-seq
87
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
280
DNA accessibility
87
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
narrow histone mark
58
broad histone mark
32
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
35
August, 2017
31
July, 2019
25
October, 2019
18
May, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
3
November, 2017
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
364
fastq
356
bam
326
bigWig
174
tsv
153
zippedFastqFolder
117
bed narrowPeak
73
bigBed narrowPeak
36
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
774
Homo sapiens
Biosample type
2373
tissue
774
primary cell
573
cell line
296
in vitro differentiated cells
9
stem cell
Organ
366
epithelium
315
pancreas
33
connective tissue
29
kidney
27
vasculature
23
blood vessel
16
vein
15
brain
12
liver
10
heart
10
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
449
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
341
hg19
285
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
774 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
9
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
9
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
4
1
+ See 86 more…
See all biosamples
Download