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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
13
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
15
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
20
bam
18
bigWig
11
bed narrowPeak
11
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3+
2
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
115
tissue
66
cell line
24
primary cell
Organ
371
epithelium
315
pancreas
34
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
24
AMP
Genome assembly (visualization)
19
hg19
12
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
11
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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