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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
112
DNA binding
69
DNA accessibility
Target of assay
102
histone
102
histone modification
54
narrow histone mark
48
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
13
May, 2021
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
429
bam
388
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
181
Homo sapiens
Biosample type
842
tissue
390
cell line
181
primary cell
128
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
181
AMP
Genome assembly (visualization)
177
GRCh38
174
hg19
Lab
181
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
monocyte
13
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