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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ATAC-seq
138
ChIP-seq
102
single cell RNA-seq
55
total RNA-seq
27
DNase-seq
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
176
DNA accessibility
159
Transcription
138
DNA binding
11
DNA methylation
5
3D chromatin structure
Target of assay
102
histone
102
histone modification
56
narrow histone mark
46
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
398
bam
365
bigWig
240
fastq
166
tsv
160
bed narrowPeak
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
bedpe bed3+
1
hic
Organism
490
Homo sapiens
Biosample type
2183
tissue
585
cell line
490
primary cell
332
in vitro differentiated cells
8
stem cell
Organ
221
epithelium
194
pancreas
38
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
5
eye
2
adipose tissue
2
artery
1
pericardium
1
vein
Project
490
AMP
Genome assembly (visualization)
384
hg19
323
GRCh38
Lab
490
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
490 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
7
13
12
10
pancreatic alpha cell
6
13
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
5
8
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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